Prevalence of diverse colorectal polyps and risk factors for colorectal carcinoma in situ and neoplastic polyps.

BACKGROUND: Most colorectal cancers originate from precancerous polyps. This study aimed to determine the prevalence of colorectal polyps with diverse pathological morphologies and to explore the risk factors for colorectal carcinoma in situ (CCS) and neoplastic polyps. METHODS: Inpatients admitted from January 2018 to May 2023 were screened through the hospital information system. Polyps were classified according to pathological morphology. The prevalence of polyps was described by frequency and 95% confidence interval. Univariate and multivariate logistic regression analyses were used to explore the risk factors for CCS and neoplastic polyps. RESULTS: In total, 2329 individuals with 3550 polyps were recruited. Among all patients, 76.99% had neoplastic polyps and 44.31% had advanced adenomas. Tubular adenoma had the highest prevalence at 60.15%, and the prevalence of CCS was 3.86%. Patients with a colorectal polyp diameter ≥ 1.0 cm or number ≥ 3 were 8.07 times or 1.98 times more likely to develop CCS than were those with a diameter < 1.0 cm or number < 3, respectively (OR 8.07, 95%CI 4.48-14.55, p < 0.0001; and OR 1.98, 95%CI 1.27-3.09, p = 0.002). The risk of CCS with schistosome egg deposition was also significantly increased (OR 2.70, 95%CI 1.05-6.98). The higher the levels of carbohydrate antigen (CA) 724 (OR 1.01, 95%CI 1.00-1.02) and CA211 (OR 1.16, 95%CI 1.03-1.32) in patients with colorectal polyps were, the greater the risk of CCS. When colorectal neoplastic polyps were analyzed, we discovered that for each 1-year increase in age, the risk of neoplastic polyps increased by 3% (OR 1.03, 95%CI 1.02-1.04), p < 0.0001. Patients with a polyp diameter ≥ 1.0 cm had a 2.11-fold greater risk of neoplastic polyps compared to diameter < 1.0 cm patients (OR 3.11, 95%CI 2.48-3.92), p < 0.0001. In addition, multiple polyps and CA199 levels are risk factors for neoplastic polyps. CONCLUSION: More than 3/4 of colorectal polyp patients have neoplastic polyps. Patients are more inclined to develop CCS and neoplastic polyps if they have large polyps (> 1.0 cm) or multifocal polyps. The levels of the tumor markers CA724 and CA211 show some potential usefulness for predicting CCS and may be exploited for early identification of high-risk populations.

Regulation of hormone pathways in wheat infested by Blumeria graminis f. sp. tritici.

BACKGROUND: Wheat powdery mildew is an obligate biotrophic pathogen infecting wheat, which can pose a serious threat to wheat production. In this study, transcriptome sequencing was carried out on wheat leaves infected by Blumeria graminis f. sp. tritici from 0 h to 7 d. RESULTS: KEGG and GO enrichment analysis revealed that the upstream biosynthetic pathways and downstream signal transduction pathways of salicylic acid, jasmonic acid, and ethylene were highly enriched at all infection periods. Trend analysis showed that the expressions of hormone-related genes were significantly expressed from 1 to 4 d, suggesting that 1 d-4 d is the main period in which hormones play a defensive role. During this period of time, the salicylic acid pathway was up-regulated, while the jasmonic acid and ethylene pathways were suppressed. Meanwhile, four key modules and 11 hub genes were identified, most of which were hormone related. CONCLUSION: This study improves the understanding of the dynamical responses of wheat to Blumeria graminis f. sp. tritici infestation at the transcriptional level and provides a reference for screening core genes regulated by hormones.

Quality and spatial intensity distribution characteristics of short-exposure spot images of a supercontinuum laser in a turbulent atmosphere.

In this study, considering the combined effects of atmospheric attenuation and turbulence, we examine the spot quality and spatial intensity distribution characteristics of a supercontinuum (SC) laser propagating in a turbulent atmosphere using the multi-layer phase-screen method. An increase in turbulence strength or a decrease in the initial beam radius resulted in a greater impact of the atmospheric turbulence on the SC laser. A decrease in source coherence results in the deterioration of the image quality of the far-field spot. Under moderate to strong turbulence, the scintillation index decreased as the source coherence decreased; however, the opposite trend was observed under weak turbulence. These results are significant for the advancement and optimization of SC laser systems.

Identification of Key Modules and Candidate Genes for Powdery Mildew Resistance of Wheat-Agropyron cristatum Translocation Line WAT-2020-17-6 by WGCNA

As one of the serious diseases of wheat, powdery mildew (Blumeria graminis f. sp. tritici) is a long-term threat to wheat production. Therefore, it is of great significance to explore new powdery mildew-resistant genes for breeding. The wild relative species of wheat provide gene resources for resistance to powdery mildew breeding. Agropyron cristatum (2n = 4x = 28, genomes PPPP) is an important wild relative of wheat, carrying excellent genes for high yield, disease resistance, and stress resistance, which can be used for wheat improvement. To understand the molecular mechanism of powdery mildew resistance in the wheat-A. cristatum translocation line WAT2020-17-6, transcriptome sequencing was performed, and the resistance genes were analyzed by weighted gene co-expression network analysis (WGCNA). In the results, 42,845 differentially expressed genes were identified and divided into 18 modules, of which six modules were highly correlated with powdery mildew resistance. Gene ontology (GO) enrichment analysis showed that the six interested modules related to powdery mildew resistance were significantly enriched in N-methyltransferase activity, autophagy, mRNA splicing via spliceosome, chloroplast envelope, and AMP binding. The candidate hub genes of the interested modules were further identified, and their regulatory relationships were analyzed based on co-expression data. The temporal expression pattern of the 12 hub genes was verified within 96 h after powdery mildew inoculation by RT-PCR assay. In this study, we preliminarily explained the resistance mechanism of the wheat-A. cristatum translocation lines and obtained the hub candidate genes, which laid a foundation in the exploration of resistance genes in A. cristatum for powdery mildew-resistant breeding in wheat.

Development and identification of an elite wheat-Hordeum californicum T6HcS/6BL translocation line ND646 containing several desirable traits.

Hordeum californicum (H. californicum, 2n=2X=14, HcHc), one of the wild relatives of wheat (Triticum aestivum L.), harbors many desirable genes and is a potential genetic resource for wheat improvement. In this study, an elite line ND646 was selected from a BC4F5 population, which was developed using 60Co-γ irradiated wheat-H. californicum disomic addition line WJ28-1 (DA6Hc) as the donor parent and Ningchun 4 as the recurrent parent. ND646 was identified as a novel wheat-H. californicum 6HcS/6BL translocation line using genomic in situ hybridization (GISH), fluorescence in situ hybridization (FISH), and H. californicum-specific expressed sequence tag (EST) markers. Further evaluation revealed that ND646 had excellent performance in several traits, such as a higher sedimentation value (SV), higher water absorption rate (WAR), and higher hardness index (HI). More importantly, it had more kernels per spike (KPS), a higher grain yields (GY), and good resistance to powdery mildew, leaf rust, and 2,4-D butylate (2,4-D). Its excellent phenotypic performance laid the foundation for further investigation of its genetic architecture and makes ND646 a useful germplasm resource for wheat breeding.

Genome-wide identification of the jumonji C domain- containing histone demethylase gene family in wheat and their expression analysis under drought stress.

Methylation and demethylation of histone play a crucial role in regulating chromatin formation and gene expression. The jumonji C (JmjC) domain-containing proteins are demethylases that are involved in regulating epigenetic modification in plants. In our study, the JmjC genes in Triticum aestivum L., Triticum turgidum L., Triticum dicoccoides L., Triticum urartu L., and Aegilops tauschii L. were identified. Phylogenetic relationship and colinearity analysis revealed that the wheat JmjC genes were conserved in A, B, and D subgenomes during evolution. Cis-acting elements analysis showed that elements related to stress response, hormone response, and light response were found in wheat JmjC genes. The expression of JmjC genes was affected by tissue types and developmental stages, and members of the same subfamily tended to have similar expression patterns in wheat. They also showed a unique expression pattern in root during PEG (Polyethylene glycol) treatment. In conclusion, comprehensive analysis indicated that three members (Tr-1A-JMJ2, Tr-1B-JMJ2, and Tr-1D-JMJ2) might be regulated by several hormones and function in the early stages of drought stress, while eight members (Tr-1B-JMJ3, Tr-4B-JMJ1, Tr-7A-JMJ1, etc.) displayed a significantly high expression after 24 h of PEG treatment, indicating a role in the later stages of drought stress. This research presents the first genome-wide study of the JmjC family in wheat, and lays the foundation for promoting the study of their functional characterization in wheat drought resistance.

First report of leaf blight caused by Pantoea agglomerans on wheat in China.

Wheat (Triticum aestivum L.) is the main grain crop in Ningxia Hui Autonomous Region, China. A new leaf blight disease of wheat was observed in many wheat fields in Yinchuan City and Wuzhong City of Ningxia during 2020-2021. The average disease incidence of the cultivar Ningchun 50 was 5 to 15%, and there appeared the evident disease symptoms from the heading stage, then the symptoms got more serious until the mature stage. The tips of the leaves were chlorotic and turned bright yellow at the early stage of the disease. Later on, the yellow leaf spots were further spread from the tip to the petiole, and the yellow-colored necrotic lesions emerged, resulted in withering and death of leaves (e-Xtra 1, a-d). To isolate and identify the pathogenic agent, diseased leaves were cut into 0.5 cm × 0.5 cm small pieces, and sterilized in 5% NaOCl solution for 5 min, and were rinsed three times in sterile water, then crushed with tweezers in 2 mL sterilized water and streaked three times onto Nutrient Agar (NA) medium. and 15 single colonies which had the same colony morphology were obtained. Of the 15 colonies, 3 (named WH1, Cx1 and HJ1) were randomly selected for further morphological, biochemical and molecular characterization. The resulting bacterial colonies were incubated at 29±1°C in the dark for 3 days, colony morphology was raised, mucoid texture, round, and smooth with entire margin; the color of these colonies was white at the beginning and turned yellow later. These bacteria were rod-shaped gram-negative cells with peritrichous flagella. Based on the physiological and biochemical assay results (e-Xtra 2), the three strains were initially identified as Pantoea agglomerans (Wang, D H., et al. 2021; Wang, J J., et al. 2021). 16S rDNA and gyrB of the three strains were amplified and sequenced by ABI3730XL sequencer in GENEWIZ (Suzhou, China). The sequences of 16S rDNA and gyrB of these strains were submitted to GenBank with the accession numbers ON428446, ON428461 and ON428462 for 16S rDNA; ON461799, ON461801, ON461803 for gyrB. 16S rDNA and gyrB sequences homology analysis showed that the three strains had the highest homology which were over 99.5% with the sequences of the reported P. agglomerans (e-Xtra 1, g) . A phylogenetic analysis based on 16S rDNA and gyrB gene sequences was performed using the MEGA6.0 proximity method, and the results of the phylogenetic tree showed that strains Cx1, WH1 and HJ1 clustered on the same clade with the reported P. agglomerans strains (e-Xtra 1, h-j). Thus, Cx1, WH1 and HJ1 were identified as P. agglomerans. Pathogenicity test was performed to complete Koch's postulates, Ningchun 50 was planted in pots, four-week-old healthy wheat seedlings were inoculated with 107 CFU/mL bacterial suspension using two inoculation methods: 1) Leaf surface was poked with disposable syringe needle, and 50 µL of suspension was injected into each of the pinholes (Suraj, S., et al. 2020); 2) Leaf was cut at 45° at the lower 2-3 cm of the leaf tip with scissors dipped in the bacterial suspension. Wheat leaves inoculated with sterile distilled water were regarded as controls. The inoculated wheat was cultivated in a greenhouse (temperature 28 ± 2°C, humidity 40 ± 2%) and covered in transparent polyethylene bags at first 96 h. Symptoms appeared at 3 days after inoculation, and after 7 days, the acupunctured wheat leaves turned chlorotic and yellow around the pinholes and some were necrotic; the leaf-cutting wheat turned yellow and necrotic from the clipping point to the leaf base; the acupunctured and cut leaves totally died after 15 days, and all of the control leaves were healthy (e-Xtra 1, e-f). Subsequently, pathogens were reisolated from inoculated leaves, and identified as P. agglomerans according to molecular identification described above. To our knowledge, this is the first report of leaf blight disease of wheat caused by Pantoea agglomerans globally as well as in China. Identifying the cause of the disease will support efforts for its future control and management.

Amelioration of Coastal Salt-Affected Soils with Biochar, Acid Modified Biochar and Wood Vinegar: Enhanced Nutrient Availability and Bacterial Community Modulation.

As an important part of the ecological environment, degraded coastal soils urgently require efficient and eco-friendly soil amendment. Biochar and wood vinegar have been proved to be effective soil amendments, and acid-modified biochar has great potential in ameliorating the degraded coastal saline-alkali soil. However, the effects of individual or combined application of biochar (BC), acid-modified biochar (ABC), and wood vinegar (WV) on coastal saline-alkali soil are unknown. Hence, biochar, wood vinegar, and acid-modified biochar were prepared by pyrolysis of poplar wood. The properties of biochar were characterized, and soil incubation experiments were conducted. The results showed that ABC decreased the soil alkalinity by acid-base neutralization and improved the soil fertility by increasing the nutrients (C, N, P). ABC provided a more suitable environment and changed the abundance and diversity of soil microorganisms. ABC increased the relative contents of specific families (e.g., Pseudomonadaceae and Sphingomonadaceae), which had strong ecological linkages in the C, N, and P cycles and organic matter degradation. The results indicated that WV had little effect on coastal saline-alkali soil, whereas individual and combined application of biochar (especially ABC) showed an efficient remediation effect. Our preliminary study demonstrated that the ABC could be a suitable solution for ameliorating degraded coastal saline-alkali soils.

Influence of different phytoremediation on soil microbial diversity and community composition in saline-alkaline land.

Soil salinization is one main environmental factor restricting plant growth and agricultural productivity. However, phytoremediation is one of the important means to improve saline-alkali soil by planting halophytes or salt-tolerant plants. In order to study whether there are differences among soil microorganisms in different phytoremediation, the effects of four plants, including alfalfa (MX), oil sunflower (YK), maize (YM) and ryegrass (HMC) on soil physicochemical properties, enzyme activity and microbial community diversity and composition were investigated in this study and the relationships between microbial community structure and soil physicochemical properties, enzyme activity were analyzed. The results showed that all plants treatments significantly decreased pH, TS (total saltinity) and BD (bulk density), while increased OM (organic matter), TN (total nitrogen), AN (available nitrogen), TP (total phosphorus), AP (available phosphorus), TK (total potassium) and TPOR (total porosity), and the number of nitrite bacteria reduced by planting at the same time. Except for YM, other treatments significantly increased the number of nitrifying and denitrifying bacteria compared with CK, while only YK increased that of fungi. Additionally, all plants increased the activity of nitrite reductase and decreased that of urease. More interestingly, plants treatments shifted microbial community compositions, and only YM significantly decreased the bacterial diversity and increased the fungal diversity. Redundancy analysis suggested that TK, pH, BD, TS, AN, OM and nitrite reductase, lignin peroxidase were the key environmental factors that shaped the bacterial community structure, while that of fungi was mainly driven by OM, nitrite reductase, urease and lignin peroxidase. The results indicated that MX and YM are the best choice for remediation of saline-alkali soil. These data can provide certain theoretical basis for the further restoration of saline-alkali land.HIGHLIGHTSThe effects of different phytoremediation on microbial diversity and community structure were different.Phytoremediation can significantly decreased pH, TS and BD, while increased OM, TN, AN, TP, AP, TK and TPOR in saline-alkali soil.All plants increased the activity of nitrite reductase and decreased the activity of urease.

Pure rotational Raman lidar for full-day troposphere temperature measurement at Zhongshan Station (69.37°S, 76.37°E), Antarctica.

A pure rotational Raman lidar (PRRL) for full-day troposphere temperature measurement was deployed in February 2020 at Zhongshan Station (69.37°S, 76.37°E), Antarctica, by the 36th Chinese National Antarctic Research Expedition. The PRRL emits a 532.23-nm laser light and employs a 203.2-mm telescope to collect atmospheric backscatter. Cubic nonpolarizing beam splitters are introduced to yield a compact optics arrangement. A quasi-single-line-extraction technique is proposed for extracting the molecular Stokes line signals. A lidar container with a window system is customized to house the whole PRRL system for long-term stable operation. An approach using a laser plummet is developed for fast and convenient adjustment of the telescope zenithward. A home-made calibration module is utilized for straightforward visual optics adjustment with ∼35.3-µrad angular positioning accuracy. Both typical daytime and nighttime temperature measurement examples are presented to verify the lidar performance. From a 30-h continuous temperature measurement result, it is found the tropopause is located at ∼10.8 km above ground level with a mean temperature of ∼203 K; significant temperature variability occurs only at the inversion areas, while off which the 1-h temperature profiles are relatively similar in form with an average lapse rate of -8.3 K/km.

Research on the distribution of neonicotinoid and fipronil pollution in the Yangtze River by high-performance liquid chromatography.

Neonicotinoid and fipronil insecticides have been consumed worldwide, particularly in China. There is growing interest in the environmental research community about the occurrence, sources, and risks of neonicotinoids and fipronil. A new method based on high-performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS) and disc solid phase extraction (SPE) techniques were developed for the determination of neonicotinoids and fipronil in seawater in this research. The effects of the styrene divinyl benzene-reverse phase sulfonated (SDB-RPS) membrane-based solid phase extraction optimization process and the HPLC separation parameters on the detection results of the target compounds were studied. Under the optimized conditions, the detection limit of this method for 12 target compounds ranged from 0.05 ng L-1 to 0.50 ng L-1 and absolute recovery was achieved from 58.9-106.5%. The results proved that this method can effectively detect neonicotinoid and fipronil pesticides in seawater. At the same time, dinotefuran, nitenpyram, thiamethoxam, imidacloprid, thiacloprid, fipronil and its metabolites were found in seawater samples from the Yangtze River Estuary and the adjacent sea area. Among them, the total concentration of neonicotinoid insecticides ranged from ND-12.45 ng L-1 and the average total concentration was 3.5 ng L-1; the total concentration of fipronil and its metabolites ranged from ND-2.45 ng L-1, and the average total concentration was 0.79 ng L-1. The results showed that there was contamination of neonicotinoids and fipronil in the Yangtze River Estuary and its adjacent area.

Development of T. aestivum L.-H. californicum alien chromosome lines and assignment of homoeologous groups of Hordeum californicum chromosomes.

Hordeum californicum (2n = 2x = 14, HH) is resistant to several wheat diseases and tolerant to lower nitrogen. In this study, a molecular karyotype of H. californicum chromosomes in the Triticum aestivum L. cv. Chinese Spring (CS)-H. californicum amphidiploid (2n = 6x = 56, AABBDDHH) was established. By genomic in situ hybridization (GISH) and multicolor fluorescent in situ hybridization (FISH) using repetitive DNA clones (pTa71, pTa794 and pSc119.2) as probes, the H. californicum chromosomes could be differentiated from each other and from the wheat chromosomes unequivocally. Based on molecular karyotype and marker analyses, 12 wheat-alien chromosome lines, including four disomic addition lines (DAH1, DAH3, DAH5 and DAH6), five telosomic addition lines (MtH7L, MtH1S, MtH1L, DtH6S and DtH6L), one multiple addition line involving H. californicum chromosome H2, one disomic substitution line (DSH4) and one translocation line (TH7S/1BL), were identified from the progenies derived from the crosses of CS-H. californicum amphidiploid with common wheat varieties. A total of 482 EST (expressed sequence tag) or SSR (simple sequence repeat) markers specific for individual H. californicum chromosomes were identified, and 47, 50, 45, 49, 21, 51 and 40 markers were assigned to chromosomes H1, H2, H3, H4, H5, H6 and H7, respectively. According to the chromosome allocation of these markers, chromosomes H2, H3, H4, H5, and H7 of H. californicum have relationship with wheat homoeologous groups 5, 2, 6, 3, and 1, and hence could be designated as 5H(c), 2H(c), 6H(c), 3H(c) and 1H(c), respectively. The chromosomes H1 and H6 were designated as 7H(c) and 4H(c), respectively, by referring to SSR markers located on rye chromosomes.

Iodine-filter-based mobile Doppler lidar to make continuous and full-azimuth-scanned wind measurements: data acquisition and analysis system, data retrieval methods, and error analysis.

An incoherent Doppler wind lidar based on iodine edge filters has been developed at the Ocean University of China for remote measurements of atmospheric wind fields. The lidar is compact enough to fit in a minivan for mobile deployment. With its sophisticated and user-friendly data acquisition and analysis system (DAAS), this lidar has made a variety of line-of-sight (LOS) wind measurements in different operational modes. Through carefully developed data retrieval procedures, various wind products are provided by the lidar, including wind profile, LOS wind velocities in plan position indicator (PPI) and range height indicator (RHI) modes, and sea surface wind. Data are processed and displayed in real time, and continuous wind measurements have been demonstrated for as many as 16 days. Full-azimuth-scanned wind measurements in PPI mode and full-elevation-scanned wind measurements in RHI mode have been achieved with this lidar. The detection range of LOS wind velocity PPI and RHI reaches 8-10 km at night and 6-8 km during daytime with range resolution of 10 m and temporal resolution of 3 min. In this paper, we introduce the DAAS architecture and describe the data retrieval methods for various operation modes. We present the measurement procedures and results of LOS wind velocities in PPI and RHI scans along with wind profiles obtained by Doppler beam swing. The sea surface wind measured for the sailing competition during the 2008 Beijing Olympics is also presented. The precision and accuracy of wind measurements are estimated through analysis of the random errors associated with photon noise and the systematic errors introduced by the assumptions made in data retrieval. The three assumptions of horizontal homogeneity of atmosphere, close-to-zero vertical wind, and uniform sensitivity are made in order to experimentally determine the zero wind ratio and the measurement sensitivity, which are important factors in LOS wind retrieval. Deviations may occur under certain meteorological conditions, leading to bias in these situations. Based on the error analyses and measurement results, we point out the application ranges of this Doppler lidar and propose several paths for future improvement.

Iodine-filter-based high spectral resolution lidar for atmospheric temperature measurements.

This paper presents a method for measuring atmosphere temperature profile using a single iodine filter as frequency discriminator. This high spectral resolution lidar (HSRL) is a system reconfigured with the transmitter of a mobile Doppler wind lidar and with a receiving subsystem redesigned to pass the backscattering optical signal through the iodine cell twice to filter out the aerosol scattering signal and to allow analysis of the molecular scattering spectrum, thus measuring temperatures. We report what are believed to be the first results of vertical temperature profiling from the ground to 16 km altitude by this lidar system (power-aperture product=0.35 Wm(2)). Concurrent observations of an L band radiosonde were carried out on June 14 and August 3, 2008, in good agreement with HSRL temperature profiles.

High spatial and temporal resolution mobile incoherent Doppler lidar for sea surface wind measurements.

A mobile Doppler lidar based on an injection-seeded diode-pumped Nd:YAG pulsed laser with a high repetition rate was developed to measure the sea surface wind (SSW) with high spatial and temporal resolution. The system was operated during the 2007 Qingdao International Regatta to measure the distribution of SSW in the racing area in real time with 50-100 m horizontal resolution and 2-10 min temporal resolution. An observation of nonuniform distribution of SSW is presented. The lidar results are compared with both buoy and wind tower measurements, which show good agreement. This lidar can be used advantageously for the 2008 Olympic sailing games as well as for observing mesoscale and microscale meteorology processes.